Apr 1, 2013

quality scores script

In a terminal, cd to folder with all the converted .qual files.
Get a list of all .qual files in that folder by running:
ls *.qual > quallist.txt

Analyse the quality of every .qual file in that list by running:
while read line;
do time quality_scores_plot.py -q $line -o quality_histograms/$line/;
done < quallist.txt

No comments:

Post a Comment