Aug 26, 2013

pprospector-1.0.1 does not work

August 26 for 2.5 hours

Objective: Help Abby install primer prospector to test possible primers.

Intro: the program 'pprospector-1.0.1' is bundled with Qiime from 1.5.0 and newer. The program 'RNAfold' is a co-dependency and is included with Vienna RNA. Vienna RNA is included with Qiime 1.7.0 (maybe 1.6.0 as well), so the stock Qiime 1.7.0 VM should be fully capable of running primer prospector.

Methods: Ran
check_primer_barcode_dimers.py

Results: file writing error

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